The repository contains an examples folder with scripts demonstrating how to use BioMedQuery's pre-assembled high-level processes and workflows.
The following examples are available:
|Search and Save PubMed Queries||Search PubMed, parse results, store them using a MySQL or SQLite backend, or export to a citation library|
|UMLS-MeSH Mapping and Filtering||For all MeSH descriptors in a given data disease_occurances, build a table to match them to their UMLS concept, and filter them by UMLS concepts|
|Exporting Citations||Export the citation for one or more PMIDs to an Endnote/Bibtex file|
|Loading MEDLINE||Load the MEDLINE baseline files|