Examples
The repository contains an examples folder with scripts demonstrating how to use BioMedQuery's pre-assembled high-level processes and workflows.
The following examples are available:
| Example | Description |
|---|---|
| Search and Save PubMed Queries | Search PubMed, parse results, store them using a MySQL or SQLite backend, or export to a citation library |
| UMLS-MeSH Mapping and Filtering | For all MeSH descriptors in a given data disease_occurances, build a table to match them to their UMLS concept, and filter them by UMLS concepts |
| Exporting Citations | Export the citation for one or more PMIDs to an Endnote/Bibtex file |
| Loading MEDLINE | Load the MEDLINE baseline files |