This is the website for the JuliaHealth organization.
We use the Julia programming language to improve medicine, health care, public health, and biomedical research.
Visit us on GitHub: https://github.com/JuliaHealth
Post in the Biology, Health, and Medicine category on Discourse.
Join us in the
#biology-health-and-medicine stream on Zulip.
Chat with us in the
#health-and-medicine channel on Slack. (Get a Slack invite here.)
Here is a list of Julia packages in the JuliaHealth organization:
|ARules.jl||Julia package for association rule learning|
|BioMedQuery.jl||Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)|
|CAOS.jl||Julia implementation of the characteristic attribute organization system (CAOS) algorithm|
|CTakesParser.jl||Julia package to parse the output of Apache cTAKES (clinical text analysis and knowledge extraction system)|
|DICOM.jl||Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files|
|DICOMClient.jl||Julia client for connecting to DICOM (Digital Imaging and Communications in Medicine) servers by using the DICOMweb RESTful services|
|DateShifting.jl||Reduce re-identification risk while preserving temporal relationships in health data sets|
|DiagnosisClassification.jl||Mappings between different systems for classifying diagnoses and problems|
|EHRAuthentication.jl||Helper code for authenticating to various electronic health record (EHR) systems|
|FHIRClient.jl||Julia client for connecting to FHIR (Fast Healthcare Interoperability Resources) servers and building SMART on FHIR applications|
|HealthBase.jl||Common namespace for functions and interfaces in the JuliaHealth ecosystem|
|ICD_GEMs.jl||ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).|
|MTIWrapper.jl||Julia wrapper to the Medical Text Indexer (MTI) application programming interface (API)|
|OMOPCDMCohortCreator.jl||Create cohorts from databases utilizing the OMOP CDM|
|OMOPCDMDatabaseConnector.jl||Utility package to connect to databases in the OMOP CDM format|
|OMOPCommonDataModel.jl||Pure Julia implementation of the OMOP Common Data Model (CDM)|
|PharmaceuticalClassification.jl||Mappings between different systems for classifying medications|
|PubChemCrawler.jl||Utilities to programmatically query the PubChem database|
|PubMedMiner.jl||Julia package for studying co-occurrences in PubMed articles|
|SMARTAppLaunch.jl||Implementation of the SMART App Launch Framework for building SMART on FHIR applications|
|SMARTBackendServices.jl||Server-to-server FHIR connections|
Our colleagues in the BioJulia organization use Julia in biology, bioinformatics, and computational biology. Check out their website and visit them on GitHub.