This is the website for the JuliaHealth organization.
We use the Julia programming language to improve medicine, health care, public health, and biomedical research.
Visit us on GitHub: https://github.com/JuliaHealth
Post in the Biology, Health, and Medicine category on Discourse.
Join us in the #biology-health-and-medicine stream on Zulip.
Chat with us in the #health-and-medicine channel on Slack. (Get a Slack invite here.)
Here is a list of Julia packages in the JuliaHealth organization:
| Package | Description |
|---|---|
| ARules.jl | Julia package for association rule learning |
| BioMedQuery.jl | Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs) |
| CAOS.jl | Julia implementation of the characteristic attribute organization system (CAOS) algorithm |
| CTakesParser.jl | Julia package to parse the output of Apache cTAKES (clinical text analysis and knowledge extraction system) |
| DICOM.jl | Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files |
| DICOMClient.jl | Julia client for connecting to DICOM (Digital Imaging and Communications in Medicine) servers by using the DICOMweb RESTful services |
| DICOMTree.jl | A small Julia tool for visualizing DICOM metadata. |
| DateShifting.jl | Reduce re-identification risk while preserving temporal relationships in health data sets |
| DiagnosisClassification.jl | Mappings between different systems for classifying diagnoses and problems |
| EHRAuthentication.jl | Helper code for authenticating to various electronic health record (EHR) systems |
| FHIRClient.jl | Julia client for connecting to FHIR (Fast Healthcare Interoperability Resources) servers and building SMART on FHIR applications |
| HealthBase.jl | Common namespace for functions and interfaces in the JuliaHealth ecosystem |
| HealthSampleData.jl | Sample health data for a variety of health formats and use cases |
| ICD_GEMs.jl | ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD). |
| KomaMRI.jl | Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development. |
| MTIWrapper.jl | Julia wrapper to the Medical Text Indexer (MTI) application programming interface (API) |
| MedEval3D.jl | Set of CUDA accelerated medical segmentation metrics. |
| MedEye3d.jl | Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data. |
| MedImage.jl | |
| MedPipe3D.jl | |
| NeuroAnalyzer.jl | Toolbox for analyzing neurophysiological data with Julia |
| OHDSIAPI.jl | A Julia interface to a variety of OHDSI web or API-based services |
| OMOPCDMCohortCreator.jl | Create cohorts from databases utilizing the OMOP CDM |
| OMOPCDMDatabaseConnector.jl | Utility package to connect to databases in the OMOP CDM format |
| OMOPCommonDataModel.jl | Pure Julia implementation of the OMOP Common Data Model (CDM) |
| PharmaceuticalClassification.jl | Mappings between different systems for classifying medications |
| PubChemCrawler.jl | Utilities to programmatically query the PubChem database |
| PubMedMiner.jl | Julia package for studying co-occurrences in PubMed articles |
| SMARTAppLaunch.jl | Implementation of the SMART App Launch Framework for building SMART on FHIR applications |
| SMARTBackendServices.jl | Server-to-server FHIR connections |
Our colleagues in the BioJulia organization use Julia in biology, bioinformatics, and computational biology. Check out their website and visit them on GitHub.
Website: https://biojulia.net
GitHub: https://github.com/BioJulia